14499   Hoxa2     Status: ES cell colonies screened / QC positives

GeneHoxa2
Chromosome6
Deletion Start52,164,641
Deletion End52,162,847
Deletion Size1,795
Genome Build38
MGI IDMGI:96174
NCBI Gene ID15399
BAC ID173E16
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 6

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF52,163,81352,163,833GGCAGGAATTTGATGGAGGTG
TUP52,163,78952,163,810AGAGACTGGGCTTCCCCGGGCT
TUR52,163,74952,163,769GGATGCAGTGCAGCTATTGTG
TDF52,163,08352,163,103GTGGAGCTGGCCTAAACAATG
TDP52,163,06052,163,082ACAGTCCCGAGGCCATCGAGGTC
TDR52,163,01452,163,033GCAGGCAGGAATCTGTGGAG

PCR Primers

PrimerSequence
SUCCAGGGAGCACACTAGATCC
SDCAGTATGAGTCTTGAGAAAGAGGG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR85 bp++-
TDFTDR90 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
14499A-E10VGB6C57BL/6NTac
14499A-G6VGB6C57BL/6NTac
14499A-H9VGB6C57BL/6NTac
14499A-B10VGB6C57BL/6NTac