Gene | 1810009J06Rik |
Chromosome | 6 |
Deletion Start | 40,964,792 |
Deletion End | 40,968,336 |
Deletion Size | 3,545 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 40,964,921 | 40,964,941 | ATGTGCAAGGGGCTAAAAGCA |
TUP | 40,964,944 | 40,964,968 | CAGTCAACACTATTTGCTACATTTA |
TUR | 40,965,008 | 40,965,032 | CAGGATGCCCATTAAGTTCATTTGC |
TDF | 40,968,007 | 40,968,037 | GCTTATAGAGACAGTATTAAAAATAAGGGGT |
TDP | 40,968,121 | 40,968,144 | CGTGGAGTCCATTCTCGCACCTCA |
TDR | 40,968,203 | 40,968,222 | GGATCTCTCCATTGCAGACG |
PCR Primers
Primer | Sequence |
SU | TCCTTTAATCTTTCTCCACTG |
SD | AATGCTAATGCAAGCACTTTAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 112 bp | + | + | - |
TDF | TDR | 216 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14539A-A12 | VGB6 | C57BL/6NTac | |
14539A-H6 | VGB6 | C57BL/6NTac | |