Gene | Retnlg |
Chromosome | 16 |
Deletion Start | 48,872,865 |
Deletion End | 48,874,406 |
Deletion Size | 1,542 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 48,873,078 | 48,873,097 | CCCTGTACCCTGGTCTAAGC |
TUP | 48,873,101 | 48,873,124 | TAGTCCTCTCCATCCCTGCCTTCC |
TUR | 48,873,126 | 48,873,144 | TGCTGAAGAAGCCCTGGTC |
TDF | 48,874,242 | 48,874,262 | TGGCTATGGCTGTGGATCTTG |
TDP | 48,874,267 | 48,874,294 | ATCCGGGATGGAAATACTTGCCACTGTC |
TDR | 48,874,299 | 48,874,319 | GTGGCCCAGTCCATTGTTGAG |
PCR Primers
Primer | Sequence |
SU | AGTTCGGCTGGTTAGAGTGG |
SD | ACGGCTTGGAGTTCACTGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 67 bp | + | + | - |
TDF | TDR | 78 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14728A-E5 | VGB6 | C57BL/6NTac | |
14728B-F3 | VGB6 | C57BL/6NTac | |