Gene | Tcirg1 |
Chromosome | 19 |
Deletion Start | 3,904,698 |
Deletion End | 3,896,113 |
Deletion Size | 8,586 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 3,904,284 | 3,904,304 | CCATCACAGCTCAACGAATCC |
TUP | 3,904,262 | 3,904,282 | TGAGCGCCTTCCAGAGACGCT |
TUR | 3,904,208 | 3,904,232 | CCAACTTACTAAACGTCTTCTCCAG |
TDF | 3,896,683 | 3,896,702 | TCATGCACCAAGCAATCCAC |
TDP | 3,896,658 | 3,896,682 | ACCATTGAGTTCTGCCTGGGCTGCA |
TDR | 3,896,623 | 3,896,641 | GGCCCAGAGACGCAAGTAG |
PCR Primers
Primer | Sequence |
SU | AGACAGCCTACGGTGGTAG |
SD | AATACAGGGCCAGTTTGCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 97 bp | + | + | - |
TDF | TDR | 80 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14800A-A2 | VGB6 | C57BL/6NTac | |
14800A-H7 | VGB6 | C57BL/6NTac | |
14800A-B12 | VGB6 | C57BL/6NTac | |
14800A-C5 | VGB6 | C57BL/6NTac | |
14800A-C9 | VGB6 | C57BL/6NTac | |
14800A-F1 | VGB6 | C57BL/6NTac | |