14805   Ecm1     Status: ES cell colonies screened / QC positives

GeneEcm1
Chromosome3
Deletion Start95,739,439
Deletion End95,734,137
Deletion Size5,303
Genome Build38
MGI IDMGI:103060
NCBI Gene ID13601
BAC ID251N21
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 3

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF95,738,84195,738,860TCGGTTCAGCTCCAGATGTG
TUP95,738,81795,738,840AAGGTGCTTTGCCAGCCTGGTGAC
TUR95,738,79395,738,814GTGGGTTACTGGGACGGAATAC
TDF95,734,65495,734,674CTTCCCGAGAACCTCTTGTCC
TDP95,734,63395,734,653CTGCCCTGGGCCTCAAGCTTC
TDR95,734,56595,734,584TGCCAGCTTCCTTTCCACAG

PCR Primers

PrimerSequence
SUATGCAGATGGGAAACTGAGG
SDTGCATATCTCCATGCACACC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR68 bp++-
TDFTDR110 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
14805A-A6VGB6C57BL/6NTac
14805A-B3VGB6C57BL/6NTac
14805A-H11VGB6C57BL/6NTac
14805A-C10VGB6C57BL/6NTac
14805A-G1VGB6C57BL/6NTac
14805A-H2VGB6C57BL/6NTac