Gene | Ecm1 |
Chromosome | 3 |
Deletion Start | 95,739,439 |
Deletion End | 95,734,137 |
Deletion Size | 5,303 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 95,738,841 | 95,738,860 | TCGGTTCAGCTCCAGATGTG |
TUP | 95,738,817 | 95,738,840 | AAGGTGCTTTGCCAGCCTGGTGAC |
TUR | 95,738,793 | 95,738,814 | GTGGGTTACTGGGACGGAATAC |
TDF | 95,734,654 | 95,734,674 | CTTCCCGAGAACCTCTTGTCC |
TDP | 95,734,633 | 95,734,653 | CTGCCCTGGGCCTCAAGCTTC |
TDR | 95,734,565 | 95,734,584 | TGCCAGCTTCCTTTCCACAG |
PCR Primers
Primer | Sequence |
SU | ATGCAGATGGGAAACTGAGG |
SD | TGCATATCTCCATGCACACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 68 bp | + | + | - |
TDF | TDR | 110 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14805A-A6 | VGB6 | C57BL/6NTac | |
14805A-B3 | VGB6 | C57BL/6NTac | |
14805A-H11 | VGB6 | C57BL/6NTac | |
14805A-C10 | VGB6 | C57BL/6NTac | |
14805A-G1 | VGB6 | C57BL/6NTac | |
14805A-H2 | VGB6 | C57BL/6NTac | |