Gene | Ccl27a |
Chromosome | 4 |
Deletion Start | 41,773,779 |
Deletion End | 41,769,413 |
Deletion Size | 4,367 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | | | GACTTTAGCGCCGCAGC |
TUP | 41,773,128 | 41,773,152 | CTTTGGTGCTGGGAATCCCACTCCA |
TUR | 41,773,095 | 41,773,115 | AGGGATGCCCTGTGGGTTAAC |
TDF | 41,769,564 | 41,769,584 | CAAGGGAAAAGGCTCCAAGGG |
TDP | 41,769,540 | 41,769,563 | ACTGTACCCAGTTTAAATCTGGTA |
TDR | 41,769,493 | 41,769,518 | CTTTATTAGTTTTGCTGTTGGGGGTT |
PCR Primers
Primer | Sequence |
SU | CCTCCCTCTTTGGTGACTCC |
SD | GAATTCCAAACCTGCAGAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TDF | TDR | 92 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14813A-B4 | VGB6 | C57BL/6NTac | |
14813A-E3 | VGB6 | C57BL/6NTac | |
14813A-E12 | VGB6 | C57BL/6NTac | |
14813A-F9 | VGB6 | C57BL/6NTac | |