Gene | Gpx6 |
Chromosome | 13 |
Deletion Start | 21,312,261 |
Deletion End | 21,319,131 |
Deletion Size | 6,871 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 21,312,706 | 21,312,725 | GCCACTACCTGCCCTATTCC |
TUP | 21,312,727 | 21,312,752 | TGCTGATCTGTAACTTGGAGCAGCCC |
TUR | 21,312,771 | 21,312,795 | CCAACTCACTTTGCTATTTAACCAC |
TDF | 21,318,972 | 21,318,991 | GTTCCTGGTGGGACCTGATG |
TDP | 21,318,993 | 21,319,016 | AGTCCCTGTCATGCGCTGGTTCCA |
TDR | 21,319,059 | 21,319,081 | ACTGGGTACTGGTTTGGTTTAGG |
PCR Primers
Primer | Sequence |
SU | CATCACTGTTGACACCCTGG |
SD | CAAGTGCCATGACCTGAATG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 90 bp | + | + | - |
TDF | TDR | 110 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14834A-G7 | VGB6 | C57BL/6NTac | |
14834A-F12 | VGB6 | C57BL/6NTac | |