Gene | Nxph4 |
Chromosome | 10 |
Deletion Start | 127,534,429 |
Deletion End | 127,526,077 |
Deletion Size | 8,353 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 127,533,962 | 127,533,985 | CTTCCCATTCCTCTTCTCCTTGTC |
TUP | 127,533,935 | 127,533,960 | CAATGCCAGGTAAGCTCTGCGATCCG |
TUR | 127,533,899 | 127,533,917 | GTCCGTGTAAGCGCGTGTG |
TDF | 127,526,179 | 127,526,202 | CTGTATCTTCGTCTCCTTCCTCAG |
TDP | 127,526,148 | 127,526,175 | TGACTACAAACTGGTGCAGAAGGTGTGC |
TDR | 127,526,120 | 127,526,144 | GGTGCTCACTCTGGAAGTTATAGTC |
PCR Primers
Primer | Sequence |
SU | TTCCCTAGCCTGTGTATGGG |
SD | AGGAGCCATTAATACTGCGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14839A-D1 | VGB6 | C57BL/6NTac | |
14839A-B5 | VGB6 | C57BL/6NTac | |
14839A-C7 | VGB6 | C57BL/6NTac | |
14839A-C8 | VGB6 | C57BL/6NTac | |
14839A-E11 | VGB6 | C57BL/6NTac | |
14839A-G10 | VGB6 | C57BL/6NTac | |