Gene | Prss48 |
Chromosome | 3 |
Deletion Start | 86,002,488 |
Deletion End | 85,993,742 |
Deletion Size | 8,747 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 86,002,382 | 86,002,401 | GGGCCTCAGGAAGGAATCAG |
TUP | 86,002,349 | 86,002,378 | ATAACGTGTGGGCATTACTTGTGAGTGGCA |
TUR | 86,002,328 | 86,002,346 | TCGCGGGAGTTTCTTGGAC |
TDF | 85,994,058 | 85,994,077 | GATTCTGGAGGGCCTCTGTC |
TDP | 85,994,031 | 85,994,056 | TGTCACATTGATGGTGTCTGGAGGCT |
TDR | 85,993,990 | 85,994,011 | GATCCTTACCGCATTCCAAACC |
PCR Primers
Primer | Sequence |
SU | ACTAATGCTCGAATCCTGCC |
SD | CTGTTGGAGTTCCTTGAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 88 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14863A-D3 | VGB6 | C57BL/6NTac | |
14863A-D10 | VGB6 | C57BL/6NTac | |
14863A-E12 | VGB6 | C57BL/6NTac | |
14863A-F4 | VGB6 | C57BL/6NTac | |