Gene | Vpreb3 |
Chromosome | 10 |
Deletion Start | 75,948,361 |
Deletion End | 75,949,479 |
Deletion Size | 1,119 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 75,948,581 | 75,948,603 | GGACCTTAGCTTCCCAATTTGTG |
TUP | 75,948,606 | 75,948,631 | TCTGCTTAGACTGTGGTCCTTCAGCG |
TUR | 75,948,637 | 75,948,657 | GCAAGAAGTTGCCCTCTCCTC |
TDF | 75,949,372 | 75,949,392 | CCACAACGCCTGTATCCTCAC |
TDP | 75,949,400 | 75,949,419 | CCCGTGCTCCCGGAGGATGA |
TDR | 75,949,429 | 75,949,447 | GTGGGCGATGGAACAGAAG |
PCR Primers
Primer | Sequence |
SU | GGTAGATATACACTAGGAAAG |
SD | AAGAACCATGAGCGTTGGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 77 bp | + | + | - |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14865A-G11 | VGB6 | C57BL/6NTac | |
14865A-G9 | VGB6 | C57BL/6NTac | |
14865A-E12 | VGB6 | C57BL/6NTac | |
14865A-G1 | VGB6 | C57BL/6NTac | |
14865A-F3 | VGB6 | C57BL/6NTac | |
14865A-C11 | VGB6 | C57BL/6NTac | |