Gene | Loxl4 |
Chromosome | 19 |
Deletion Start | 42,608,528 |
Deletion End | 42,595,234 |
Deletion Size | 13,295 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 42,607,733 | 42,607,756 | GACTTCATCTTCCTCCCTCAACAG |
TUP | 42,607,707 | 42,607,731 | TCCCATCTGGCTGGACAATGTTCGT |
TUR | 42,607,686 | 42,607,705 | GGTCTTCTCGGTGCCCAAAC |
TDF | 42,595,457 | 42,595,474 | TGCCTGGCTACCCTGATG |
TDP | 42,595,426 | 42,595,450 | CGCTGTGGTGGCTTTGTCCACTCAA |
TDR | 42,595,406 | 42,595,423 | TGTGGGCCAAAGCAGAAG |
PCR Primers
Primer | Sequence |
SU | ACCAAAGTGAAGTCCCTCCC |
SD | AGAGCCTGAGATGCGAGTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 69 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14892A-F3 | VGB6 | C57BL/6NTac | |
14892A-A12 | VGB6 | C57BL/6NTac | |
14892A-F2 | VGB6 | C57BL/6NTac | |