Gene | Pcyox1l |
Chromosome | 18 |
Deletion Start | 61,707,578 |
Deletion End | 61,697,290 |
Deletion Size | 10,289 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 18
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 61,707,235 | 61,707,253 | CTGCAAAGCACATGGTCAC |
TUP | 61,707,208 | 61,707,232 | CACATTCGCTCTGGAGAAGCTGGCG |
TUR | 61,707,187 | 61,707,206 | CCCAGCTCCTGTCTTGTCAC |
TDF | 61,697,821 | 61,697,840 | TCCGCCCATTGAGGACATTC |
TDP | 61,697,794 | 61,697,816 | CTCCTTCCAGCCCACCGTGGTCT |
TDR | 61,697,746 | 61,697,765 | GGTCCGGGAAACCGAAGTAG |
PCR Primers
Primer | Sequence |
SU | GCGCAGATTATCCTGTCCTC |
SD | ACTGACTTGAATTTCCTTCCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 67 bp | + | + | - |
TDF | TDR | 95 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14906A-H10 | VGB6 | C57BL/6NTac | |
14906C-B11 | VGB6 | C57BL/6NTac | |
14906C-D6 | VGB6 | C57BL/6NTac | |