Gene | Vwa2 |
Chromosome | 19 |
Deletion Start | 56,881,138 |
Deletion End | 56,910,843 |
Deletion Size | 29,706 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 56,881,306 | 56,881,328 | GCCAGAAGTTGATGTCAGATGTC |
TUP | 56,881,331 | 56,881,355 | CCTCCTTGGTCACTCTCCACCTCGG |
TUR | 56,881,393 | 56,881,414 | TGCCAGCCTATCTCACTGAAAG |
TDF | 56,910,238 | 56,910,259 | TGAGGCCAGAGATGTGTAGATG |
TDP | 56,910,263 | 56,910,288 | AGACACATTATGGCAGCTAGTGGCCA |
TDR | 56,910,309 | 56,910,326 | GCTGTTCCGCTCAGTCAC |
PCR Primers
Primer | Sequence |
SU | CTTCACCTTGTTCTGGAGGC |
SD | TCCCTTTGCAAATGAAATCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 109 bp | + | + | - |
TDF | TDR | 89 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14907A-A12 | VGB6 | C57BL/6NTac | |
14907A-D8 | VGB6 | C57BL/6NTac | |
14907A-G3 | VGB6 | C57BL/6NTac | |