Gene | Ift27 |
Chromosome | 15 |
Deletion Start | 78,173,799 |
Deletion End | 78,159,530 |
Deletion Size | 14,270 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 78,173,019 | 78,173,039 | TTCCCAGATTCGCCTGACTTC |
TUP | 78,172,987 | 78,173,015 | CTGTGGGTCAGGAGTGTTGGCTACTTCTT |
TUR | 78,172,934 | 78,172,954 | GGACCCGTGAGCACAATAAAC |
TDF | 78,160,250 | 78,160,269 | GGAGGAGCCACGCATTCTTG |
TDP | 78,160,221 | 78,160,242 | CCGGCACCATCCCGGAAGTCTC |
TDR | 78,160,177 | 78,160,196 | CGGTAGGGCCGAGTGTAAAG |
PCR Primers
Primer | Sequence |
SU | TTGATGATGGTTGCCAGGAG |
SD | CCCTCAAGGAAGTGTGGAAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 106 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
14917 A-A12 | VGB6 | C57BL/6NTac | |
14917A-F5 | VGB6 | C57BL/6NTac | |