Gene | Uncx |
Chromosome | 5 |
Deletion Start | 139,543,997 |
Deletion End | 139,547,792 |
Deletion Size | 3,796 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 139,544,536 | 139,544,556 | AGCTGGAGAAGGCGTTCAATG |
TUP | 139,544,559 | 139,544,584 | AGCCACTACCCGGACGTGTTTATGCG |
TUR | 139,544,636 | 139,544,653 | CCTTGGGCGACACCAATC |
TDF | 139,547,300 | 139,547,321 | CAAGGGCCACTTCTTGCTCTAC |
TDP | 139,547,336 | 139,547,359 | CCTGGGTTTCCTAGTGCCACAGGC |
TDR | 139,547,383 | 139,547,403 | CGTCCTTGGGCACCAATTCAG |
PCR Primers
Primer | Sequence |
SU | TTATGGAGGTGCGTGTCAGG |
SD | TTGGTCCCCATCGACACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 118 bp | + | + | - |
TDF | TDR | 104 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15092A-F10 | VGB6 | C57BL/6NTac | |
15092A-B11 | VGB6 | C57BL/6NTac | |