Gene | Vipr1 |
Chromosome | 9 |
Deletion Start | 121,642,852 |
Deletion End | 121,669,612 |
Deletion Size | 26,761 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 121,643,660 | 121,643,679 | CCAGCCACACTTGGACAGAG |
TUP | 121,643,681 | 121,643,707 | TGATCTTCCCTTCCCTTGCTCTAGGTC |
TUR | 121,643,739 | 121,643,762 | TGTTCCAGACCAGAATCCACTAAG |
TDF | 121,668,732 | 121,668,751 | TTTGCCTCACCTCCTCTTCC |
TDP | 121,668,762 | 121,668,785 | TTTGTGGTGGCCATCCTCTACTGC |
TDR | 121,668,791 | 121,668,809 | GGCACTCACCTCGCCATTG |
PCR Primers
Primer | Sequence |
SU | TGTGGCCCTTCTAGTCCAAG |
SD | GAGCTGGCAGATAAACGGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 103 bp | + | + | - |
TDF | TDR | 78 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15119A-G3 | VGB6 | C57BL/6NTac | |
15119E-A7 | VGB6 | C57BL/6NTac | |