15162   Cog6     Status: ES cell colonies screened / QC positives

GeneCog6
Chromosome3
Deletion Start53,017,195
Deletion End52,983,029
Deletion Size34,167
Genome Build38
MGI IDMGI:1914792
NCBI Gene ID67542
BAC ID440E18
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 3

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF53,016,84853,016,869TCTTATCAGAGCTGGCTGTCTC
TUP53,016,82353,016,847CCCTGCAGCTTTGAGTAGCCAGGTA
TUR53,016,77453,016,793TTACGGCTCCCACCTTACTG
TDF52,983,21552,983,235TGCTGGGCTTCTGTTATCTTC
TDP52,983,18752,983,214TGGTTGTGTTTGCTCATCCATAGGGAGC
TDR52,983,13752,983,155CACTTCCGCGTAGGCTCTG

PCR Primers

PrimerSequence
SUGCATGCCAGCTACTGGTTTC
SDCAATTAGAGGAAAGCAGCGG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR96 bp++-
TDFTDR99 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
15162A-G8VGB6C57BL/6NTac
15162A-F2VGB6C57BL/6NTac
15162A-G5VGB6C57BL/6NTac
15162A-A7VGB6C57BL/6NTac