Gene | Cog6 |
Chromosome | 3 |
Deletion Start | 53,017,195 |
Deletion End | 52,983,029 |
Deletion Size | 34,167 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 53,016,848 | 53,016,869 | TCTTATCAGAGCTGGCTGTCTC |
TUP | 53,016,823 | 53,016,847 | CCCTGCAGCTTTGAGTAGCCAGGTA |
TUR | 53,016,774 | 53,016,793 | TTACGGCTCCCACCTTACTG |
TDF | 52,983,215 | 52,983,235 | TGCTGGGCTTCTGTTATCTTC |
TDP | 52,983,187 | 52,983,214 | TGGTTGTGTTTGCTCATCCATAGGGAGC |
TDR | 52,983,137 | 52,983,155 | CACTTCCGCGTAGGCTCTG |
PCR Primers
Primer | Sequence |
SU | GCATGCCAGCTACTGGTTTC |
SD | CAATTAGAGGAAAGCAGCGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 99 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15162A-G8 | VGB6 | C57BL/6NTac | |
15162A-F2 | VGB6 | C57BL/6NTac | |
15162A-G5 | VGB6 | C57BL/6NTac | |
15162A-A7 | VGB6 | C57BL/6NTac | |