15164   Cdh23     Status: ES cell colonies screened / QC positives

GeneCdh23
Chromosome10
Deletion Start60,657,330
Deletion End60,650,095
Deletion Size7,236
Genome Build38
MGI IDMGI:1890219
NCBI Gene ID22295
BAC ID174O15
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 10

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF60,657,30660,657,328GTACTCCCTGGTCACTTGCTATG
TUP60,657,28160,657,304TGTGCTCTGGCTTCTCATGCTGGT
TUR60,657,23060,657,251GCACTGGCTGGCATTATCAAAG
TDF60,650,30260,650,320CCAGTGCTCAGCAGCTATC
TDP60,650,27860,650,301TGTGGCCAACCTGACTGTCTTGGG
TDR60,650,21660,650,240ACATATCCTACAGAGTGACACAGAG

PCR Primers

PrimerSequence
SUTGTTGGATCTGCGTTCAGAG
SDCTTGGAGCAGAAGAGAAGTG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR99 bp++-
TDFTDR105 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
15164A-B8VGB6C57BL/6NTac
15164A-D4VGB6C57BL/6NTac
15164A-G5VGB6C57BL/6NTac
15164A-H1VGB6C57BL/6NTac
15164A-D11VGB6C57BL/6NTac
15164A-F12VGB6C57BL/6NTac