Gene | Cdh23 |
Chromosome | 10 |
Deletion Start | 60,657,330 |
Deletion End | 60,650,095 |
Deletion Size | 7,236 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 60,657,306 | 60,657,328 | GTACTCCCTGGTCACTTGCTATG |
TUP | 60,657,281 | 60,657,304 | TGTGCTCTGGCTTCTCATGCTGGT |
TUR | 60,657,230 | 60,657,251 | GCACTGGCTGGCATTATCAAAG |
TDF | 60,650,302 | 60,650,320 | CCAGTGCTCAGCAGCTATC |
TDP | 60,650,278 | 60,650,301 | TGTGGCCAACCTGACTGTCTTGGG |
TDR | 60,650,216 | 60,650,240 | ACATATCCTACAGAGTGACACAGAG |
PCR Primers
Primer | Sequence |
SU | TGTTGGATCTGCGTTCAGAG |
SD | CTTGGAGCAGAAGAGAAGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 99 bp | + | + | - |
TDF | TDR | 105 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15164A-B8 | VGB6 | C57BL/6NTac | |
15164A-D4 | VGB6 | C57BL/6NTac | |
15164A-G5 | VGB6 | C57BL/6NTac | |
15164A-H1 | VGB6 | C57BL/6NTac | |
15164A-D11 | VGB6 | C57BL/6NTac | |
15164A-F12 | VGB6 | C57BL/6NTac | |