Gene | Reg3d |
Chromosome | 6 |
Deletion Start | 78,378,503 |
Deletion End | 78,376,007 |
Deletion Size | 2,497 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 78,378,462 | 78,378,481 | GCATGTCCTGGATGCTACTG |
TUP | 78,378,435 | 78,378,461 | TGTTGCCTGATGTCCCTTTCTTGGGTA |
TUR | 78,378,409 | 78,378,431 | GCTAGACACACAACAACTTTACC |
TDF | 78,376,463 | 78,376,486 | TCTGACCCTCTGACCTTCTATAAC |
TDP | 78,376,437 | 78,376,462 | TGGGAGATACCACCCTCCATGTCTGC |
TDR | 78,376,405 | 78,376,427 | CCTGAGACAAAGCTGCACAGTAG |
PCR Primers
Primer | Sequence |
SU | AGGAGCTGGCACTTCTTCAC |
SD | GGCAATGCCTTCATTTGTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 73 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15187A-A10 | VGB6 | C57BL/6NTac | |
15187A-G4 | VGB6 | C57BL/6NTac | |