Gene | Tnfsf11 |
Chromosome | 14 |
Deletion Start | 78,307,886 |
Deletion End | 78,278,476 |
Deletion Size | 29,411 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 14
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 78,307,511 | 78,307,534 | CCAGCCAAGCTCATCTCCTATCAG |
TUP | 78,307,488 | 78,307,510 | CGCAGCGTGCAGAAGCTGAACTC |
TUR | 78,307,464 | 78,307,486 | CAAACCCATCCTCAGCCAGAATC |
TDF | 78,278,656 | 78,278,680 | CGAGCTGGTGAAGAAATTAGCATTC |
TDP | 78,278,631 | 78,278,652 | TGTCCAACCCTTCCCTGCTGGA |
TDR | 78,278,570 | 78,278,593 | TGAGTCTCAGTCTATGTCCTGAAC |
PCR Primers
Primer | Sequence |
SU | AAAGGAAGGAGGGCAGATGT |
SD | GCAATGACATGGCATCCTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 111 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15225A-F3 | VGB6 | C57BL/6NTac | |
15225A-C1 | VGB6 | C57BL/6NTac | |