Gene | Arfgap1 |
Chromosome | 2 |
Deletion Start | 180,981,453 |
Deletion End | 180,971,058 |
Deletion Size | 10,396 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 180,971,060 | 180,971,079 | CAGCCCAAGAACCAGGAAAG |
TUP | 180,971,081 | 180,971,104 | TCTTAAGGAAGTCCGGGCACAGGA |
TUR | 180,971,126 | 180,971,144 | GACGCTCATCAGCCCAAAG |
TDF | 180,981,347 | 180,981,364 | GGCTGGGACAACCAGAAC |
TDP | 180,981,365 | 180,981,388 | TGGTAGGAGCCTAGCACCCTAGCC |
TDR | 180,981,416 | 180,981,439 | AGGAGGAACAAGAAGGGCAAAGTG |
PCR Primers
Primer | Sequence |
SU | CTGGGAGAGAGGAAGTGCAG |
SD | GCTGTGGACTTAGGTGAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 85 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15322A-B8 | VGB6 | C57BL/6NTac | |
15322A-B9 | VGB6 | C57BL/6NTac | |
15322A-C8 | VGB6 | C57BL/6NTac | |
15322A-G7 | VGB6 | C57BL/6NTac | |
15322A-G12 | VGB6 | C57BL/6NTac | |