15346   Cnr1     Status: ES cell colonies screened / QC positives

GeneCnr1
Chromosome4
Deletion Start33,945,090
Deletion End33,943,617
Deletion Size1,474
Genome Build38
MGI IDMGI:104615
NCBI Gene ID12801
BAC ID401F11
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 4

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF33,944,01633,944,036AACCTGCTGGTGCTATGTGTC
TUP33,944,03833,944,060TCCTTCACTCCCGCAGTCTCCGA
TUR33,944,07833,944,095GCCAGGCTGCCAATGAAG
TDF33,944,74433,944,768GACGGTGTTTGCCTTCTGTAGTATG
TDP33,944,77033,944,791TCTGCCTGCTGAACTCCACCGT
TDR33,944,82333,944,843GCGGAAAGCATGTCTCAGGTC

PCR Primers

PrimerSequence
SUTCTTCCCATGAGTTGCACAG
SDCACTGACACACAACTAACAGGAC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR80 bp++-
TDFTDR100 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
15346A-A11VGB6C57BL/6NTac
15346A-C7VGB6C57BL/6NTac
15346A-C9VGB6C57BL/6NTac
15346A-D8VGB6C57BL/6NTac
15346A-E1VGB6C57BL/6NTac
15346A-H4VGB6C57BL/6NTac