Gene | Cnr1 |
Chromosome | 4 |
Deletion Start | 33,945,090 |
Deletion End | 33,943,617 |
Deletion Size | 1,474 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 33,944,016 | 33,944,036 | AACCTGCTGGTGCTATGTGTC |
TUP | 33,944,038 | 33,944,060 | TCCTTCACTCCCGCAGTCTCCGA |
TUR | 33,944,078 | 33,944,095 | GCCAGGCTGCCAATGAAG |
TDF | 33,944,744 | 33,944,768 | GACGGTGTTTGCCTTCTGTAGTATG |
TDP | 33,944,770 | 33,944,791 | TCTGCCTGCTGAACTCCACCGT |
TDR | 33,944,823 | 33,944,843 | GCGGAAAGCATGTCTCAGGTC |
PCR Primers
Primer | Sequence |
SU | TCTTCCCATGAGTTGCACAG |
SD | CACTGACACACAACTAACAGGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 100 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15346A-A11 | VGB6 | C57BL/6NTac | |
15346A-C7 | VGB6 | C57BL/6NTac | |
15346A-C9 | VGB6 | C57BL/6NTac | |
15346A-D8 | VGB6 | C57BL/6NTac | |
15346A-E1 | VGB6 | C57BL/6NTac | |
15346A-H4 | VGB6 | C57BL/6NTac | |