Gene | Gcsh |
Chromosome | 8 |
Deletion Start | 116,993,423 |
Deletion End | 116,982,602 |
Deletion Size | 10,822 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 116,992,714 | 116,992,732 | CTGGGAGACCTGCCCATTG |
TUP | 116,992,689 | 116,992,711 | CGCGTTTGCACAGTTAGCTGGGA |
TUR | 116,992,639 | 116,992,660 | CGATTTGTGCTGCCTGAGTAAG |
TDF | 116,982,739 | 116,982,760 | GGCAATGTGAACTGAGGTTCTG |
TDP | 116,982,709 | 116,982,736 | TTGGGTACAGGTTGGCTGATCAAGATGA |
TDR | 116,982,624 | 116,982,647 | CATGGTCACTCCTCAATGGACTTC |
PCR Primers
Primer | Sequence |
SU | CTAGATTGCGGACTTGGAGC |
SD | AATCCAGTGGTGGATATGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 137 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15503A-A10 | VGB6 | C57BL/6NTac | |
15503A-B2 | VGB6 | C57BL/6NTac | |
15503A-D9 | VGB6 | C57BL/6NTac | |
15503A-H2 | VGB6 | C57BL/6NTac | |