Gene | Gnpat |
Chromosome | 8 |
Deletion Start | 124,889,381 |
Deletion End | 124,863,241 |
Deletion Size | 26,141 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 124,863,414 | 124,863,433 | AGCGGGTCCTAACCCAGTTG |
TUP | 124,863,436 | 124,863,459 | TACGTGGCTTGGTATCCACGGCAA |
TUR | 124,863,464 | 124,863,482 | TTAACCGAGGCGCAGACAC |
TDF | 124,889,071 | 124,889,092 | CCTAGTGCATGATGCGGGTAAG |
TDP | 124,889,093 | 124,889,118 | AGCTGCCTGGATGCTATAGGCTCAGA |
TDR | 124,889,162 | 124,889,182 | TGGTTCCAGTGGGCTCTATTG |
PCR Primers
Primer | Sequence |
SU | TGGGAATCAGCACGGAGAC |
SD | AGTGCCCTGTGGTTTGATTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 69 bp | + | + | - |
TDF | TDR | 112 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15504A-E6 | VGB6 | C57BL/6NTac | |
15504A-E11 | VGB6 | C57BL/6NTac | |
15504A-H8 | VGB6 | C57BL/6NTac | |
15504A-H3 | VGB6 | C57BL/6NTac | |
15504A-F5 | VGB6 | C57BL/6NTac | |