Gene | Pcnt |
Chromosome | 10 |
Deletion Start | 76,442,615 |
Deletion End | 76,418,364 |
Deletion Size | 24,252 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 76,442,355 | 76,442,373 | TCGCTCCGCCCTATTACAC |
TUP | 76,442,330 | 76,442,354 | CCACAGCCAATCAGCGTCAGAGACG |
TUR | 76,442,254 | 76,442,275 | CACCGGAAGCACAACAACTAAG |
TDF | 76,418,591 | 76,418,611 | AGGATATGCACAGGCTTGACC |
TDP | 76,418,565 | 76,418,589 | CTGTGGGAACTCTGTCTCAGCAGCA |
TDR | 76,418,525 | 76,418,543 | CAGCAGGTGCCCTTCATTG |
PCR Primers
Primer | Sequence |
SU | GTGTTCGCAGAAACACATCG |
SD | GGACGAGTGAGGGAAAACTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 120 bp | + | + | - |
TDF | TDR | 87 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15563A-B4 | VGB6 | C57BL/6NTac | |
15563A-E8 | VGB6 | C57BL/6NTac | |
15563A-A8 | VGB6 | C57BL/6NTac | |
15563A-E10 | VGB6 | C57BL/6NTac | |