Gene | Otx1 |
Chromosome | 11 |
Deletion Start | 21,999,473 |
Deletion End | 21,996,236 |
Deletion Size | 3,238 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 21,998,826 | 21,998,847 | GTCCTGTTTCTGTCCACCTCTG |
TUP | 21,998,793 | 21,998,815 | TGCCTCTCAGTTAGGGAGCGTGT |
TUR | 21,998,762 | 21,998,781 | GCCACCCTTTCCTTCTCATC |
TDF | 21,996,639 | 21,996,657 | CGCAGCCTCCTACCCTATG |
TDP | 21,996,616 | 21,996,637 | CCTATGGCCAGGGCGGAAGCTA |
TDR | 21,996,564 | 21,996,582 | GCAGTCTACACCGCCAAAG |
PCR Primers
Primer | Sequence |
SU | GAGTGTCTTTGGCCCTTGTC |
SD | CAGAGGGTCAGAGCGAAGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 94 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15594A-A10 | VGB6 | C57BL/6NTac | |
15594B-C10 | VGB6 | C57BL/6NTac | |
15594C-A3 | VGB6 | C57BL/6NTac | |
15594C-G8 | VGB6 | C57BL/6NTac | |
15594C-D1 | VGB6 | C57BL/6NTac | |