Gene | Gucy2e |
Chromosome | 11 |
Deletion Start | 69,236,642 |
Deletion End | 69,223,017 |
Deletion Size | 13,626 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 69,235,860 | 69,235,878 | TCCTGCCGAGAGTGGACAG |
TUP | 69,235,836 | 69,235,857 | TAGCGAGCCAGCCTCTGTGTCC |
TUR | 69,235,792 | 69,235,811 | AGCAGCACCGAGTGCATCAC |
TDF | 69,223,345 | 69,223,367 | CTTCAACAAGCCCATTCCCAAAC |
TDP | 69,223,321 | 69,223,344 | CACCTGATCTGCAGCCAGGGTGAG |
TDR | 69,223,282 | 69,223,301 | CGCCAGCATCCAGCTTTCTC |
PCR Primers
Primer | Sequence |
SU | CTTCGGTCCTGTATGAAGGC |
SD | CTGACAGCCTATGAGCTGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15604A-E1 | VGB6 | C57BL/6NTac | |