Gene | Stat5a |
Chromosome | 11 |
Deletion Start | 100,884,040 |
Deletion End | 100,861,341 |
Deletion Size | 22,700 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 100,861,506 | 100,861,529 | GGTCTCCTCTTGTGGTTTGGTATG |
TUP | 100,861,532 | 100,861,557 | TCTGGTTCTATCTGTCCTTGTGCGGA |
TUR | 100,861,582 | 100,861,604 | TGATAGCTCCAGTTTCCCTCTTC |
TDF | 100,883,396 | 100,883,415 | CACTACCACACCCAGCCAAG |
TDP | 100,883,419 | 100,883,445 | TAGAGTCTGATTCTAGCTGCAGGTGGC |
TDR | 100,883,483 | 100,883,505 | GACCACTAATCCTCCAAACCATC |
PCR Primers
Primer | Sequence |
SU | GTCTAGTTAGGGACTGTG |
SD | AGTTGCCTAAACCTGCCTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 99 bp | + | + | - |
TDF | TDR | 110 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15641A-E5 | VGB6 | C57BL/6NTac | |
15641A-D11 | VGB6 | C57BL/6NTac | |
15641A-A7 | VGB6 | C57BL/6NTac | |
15641A-G7 | VGB6 | C57BL/6NTac | |
15641A-F6 | VGB6 | C57BL/6NTac | |