Gene | Vipar |
Chromosome | 12 |
Deletion Start | 87,263,994 |
Deletion End | 87,239,721 |
Deletion Size | 24,274 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 12
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 87,263,890 | 87,263,912 | TCTCACAGGTAGGTTTCCACAAG |
TUP | 87,263,853 | 87,263,881 | AAGGGTCATACCATACTCTTGGATGCGTC |
TUR | 87,263,819 | 87,263,841 | ACGAGCCTACTGGAGATGAGAAG |
TDF | 87,239,841 | 87,239,862 | GCCTTCCTTGTCTGCTTTCTTC |
TDP | 87,239,810 | 87,239,839 | CAGCAAATTCGATGGAAGAACTAAGGGTCC |
TDR | 87,239,786 | 87,239,805 | GCGAGGAGGCTTCAGGGTAG |
PCR Primers
Primer | Sequence |
SU | CCTTACAACATTTGCCTCTCG |
SD | GAAATGCCTATGCCCAACAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 77 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15673A-B2 | VGB6 | C57BL/6NTac | |
15673A-B4 | VGB6 | C57BL/6NTac | |
15673A-C5 | VGB6 | C57BL/6NTac | |
15673A-E3 | VGB6 | C57BL/6NTac | |
15673A-F1 | VGB6 | C57BL/6NTac | |