Gene | Rab3c |
Chromosome | 13 |
Deletion Start | 110,280,015 |
Deletion End | 110,260,484 |
Deletion Size | 19,532 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 110,279,819 | 110,279,838 | TGAGGACAGCCCATCTCTTG |
TUP | 110,279,791 | 110,279,817 | TGTCTTTGATGGTCTTGGCTTCCTGGG |
TUR | 110,279,768 | 110,279,787 | CCAGTTCACACCGCTATCAC |
TDF | 110,260,926 | 110,260,950 | TGGTGACTTTGATTGCTTGTGAATG |
TDP | 110,260,899 | 110,260,924 | TGAAGAGTGACAAGCACCAACACAGC |
TDR | 110,260,827 | 110,260,849 | CCTCTGATGCTGGTATCCATGAC |
PCR Primers
Primer | Sequence |
SU | AGCGCTCTTTGAAGAAATGG |
SD | CACCAAACACAGGAGCTTGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 124 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15713A-E10 | VGB6 | C57BL/6NTac | |
15713A-B1 | VGB6 | C57BL/6NTac | |