Gene | Gzma |
Chromosome | 13 |
Deletion Start | 113,100,948 |
Deletion End | 113,093,876 |
Deletion Size | 7,073 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 113,100,277 | 113,100,297 | GACCATGCACTGGTGGGAATG |
TUP | 113,100,249 | 113,100,274 | ATCATTGTTCTTGCCCTGACCCGGGA |
TUR | 113,100,189 | 113,100,212 | GCCAATCTTCCTACCAGGTTCTTC |
TDF | 113,094,695 | 113,094,712 | TCCCATGTCCTGCCTTCC |
TDP | 113,094,672 | 113,094,693 | TTAGGGCACCCAGGAGCCTGAC |
TDR | 113,094,646 | 113,094,666 | TGGTGCATGTGATTGCCTGAG |
PCR Primers
Primer | Sequence |
SU | CAAAGAGCTCCTACTAAGGGACC |
SD | CTAGGTGTTCCTGGGCTGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 109 bp | + | + | - |
TDF | TDR | 67 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15716A-A10 | VGB6 | C57BL/6NTac | |
15716A-H8 | VGB6 | C57BL/6NTac | |
15716A-E8 | VGB6 | C57BL/6NTac | |
15716A-E5 | VGB6 | C57BL/6NTac | |
15716A-C5 | VGB6 | C57BL/6NTac | |
15716A-E2 | VGB6 | C57BL/6NTac | |