Gene | Atp12a |
Chromosome | 14 |
Deletion Start | 56,376,268 |
Deletion End | 56,365,284 |
Deletion Size | 10,985 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 14
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 56,365,474 | 56,365,493 | TGTGCAAGAAGGGTCCTCAG |
TUP | 56,365,494 | 56,365,517 | AGTTGCCAAGCACAGCAGCTGTTC |
TUR | 56,365,539 | 56,365,559 | GCATCCAACAGAACCCAAGTC |
TDF | 56,375,945 | 56,375,963 | GCGCCATTGCTTCATGTTC |
TDP | 56,375,966 | 56,375,988 | ACATGCAATCCTGCAATCGCCGA |
TDR | 56,375,993 | 56,376,012 | GACAAAGTCACCACCGAGTG |
PCR Primers
Primer | Sequence |
SU | TCCAGCCAGGTATCAAGAGG |
SD | CATCTGCAGTAGGAAACTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 68 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15737A-B4 | VGB6 | C57BL/6NTac | |
15737A-G9 | VGB6 | C57BL/6NTac | |
15737A-B12 | VGB6 | C57BL/6NTac | |
15737A-C2 | VGB6 | C57BL/6NTac | |
15737A-F10 | VGB6 | C57BL/6NTac | |
15737A-C5 | VGB6 | C57BL/6NTac | |