Gene | Gxylt1 |
Chromosome | 15 |
Deletion Start | 93,275,078 |
Deletion End | 93,259,069 |
Deletion Size | 16,010 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 93,274,271 | 93,274,290 | TAATTCGCACTGCCTCCTTG |
TUP | 93,274,243 | 93,274,269 | TGGATTCCTGTGTTTGGGCAGTTCTGA |
TUR | 93,274,208 | 93,274,230 | ACAATTCCTGTCTTCCACTCTCC |
TDF | 93,259,547 | 93,259,566 | GGTTCCTGGACAGGCTGATG |
TDP | 93,259,519 | 93,259,545 | CCGAGCAAGCGTAGTTGTTTCCCTGTC |
TDR | 93,259,463 | 93,259,486 | CCCAGAACGCTAAGAATGAGAATC |
PCR Primers
Primer | Sequence |
SU | AGCATCCATCTCAAGGCTCG |
SD | CACCAGGACCTGCTCTATGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 104 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15783A-D8 | VGB6 | C57BL/6NTac | |
15783A-H10 | VGB6 | C57BL/6NTac | |