Gene | Efcab1 |
Chromosome | 16 |
Deletion Start | 14,924,211 |
Deletion End | 14,906,758 |
Deletion Size | 17,454 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 14,906,803 | 14,906,826 | TGCAAGCACTGTAAGTAAGAACTG |
TUP | 14,906,829 | 14,906,857 | TGCAAGAGTTCCTATGACTTCTGGGCCAG |
TUR | 14,906,875 | 14,906,895 | TGGTGGAAGCAGGAAGTAGAG |
TDF | 14,923,717 | 14,923,741 | CTGGTCTTCAGTATTCATTGGGTTC |
TDP | 14,923,751 | 14,923,779 | TAGACTCCAATCCCAGTGAAGGAATCCAC |
TDR | 14,923,787 | 14,923,805 | TTGCTTGCCCTCACTTTCC |
PCR Primers
Primer | Sequence |
SU | AAATGCAGGCACAGTGTCTG |
SD | CCATGTATCCTTCATCTTGCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 93 bp | + | + | - |
TDF | TDR | 89 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15803A-A9 | VGB6 | C57BL/6NTac | |
15803A-D9 | VGB6 | C57BL/6NTac | |
15803A-H1 | VGB6 | C57BL/6NTac | |
15803A-F12 | VGB6 | C57BL/6NTac | |