Gene | Gabpa |
Chromosome | 16 |
Deletion Start | 84,860,655 |
Deletion End | 84,839,110 |
Deletion Size | 21,546 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 84,840,019 | 84,840,039 | CGAAGGAACAGTGGTGAGATG |
TUP | 84,840,042 | 84,840,068 | AGCTACCATACCTGACTTTCCTTGGGC |
TUR | 84,840,075 | 84,840,094 | TGAGGCCCAGAGTTCAGATG |
TDF | 84,860,459 | 84,860,478 | TGGATACAGTGCAGCAGAAC |
TDP | 84,860,479 | 84,860,506 | TGAACCGTCTGGTCATAGAGTGTGAACA |
TDR | 84,860,510 | 84,860,527 | TGCATCCGTGCCAGTTTC |
PCR Primers
Primer | Sequence |
SU | CCAACAAGTTCCAATCCATAG |
SD | ATCTTCAGACGCTACTGGCT |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 76 bp | + | + | - |
TDF | TDR | 69 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15828A-C6 | VGB6 | C57BL/6NTac | |
15828A-C12 | VGB6 | C57BL/6NTac | |
15828A-E4 | VGB6 | C57BL/6NTac | |
15828A-E5 | VGB6 | C57BL/6NTac | |
15828A-G8 | VGB6 | C57BL/6NTac | |