Gene | Gart |
Chromosome | 16 |
Deletion Start | 91,643,098 |
Deletion End | 91,621,532 |
Deletion Size | 21,567 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 91,642,162 | 91,642,182 | CCTTCCTGACTCGACCAGAAC |
TUP | 91,642,137 | 91,642,160 | AGCCTCCCAGTTTGCCTTAGAGCA |
TUR | 91,642,105 | 91,642,127 | GCCATAGCAAATACGGACAAAGC |
TDF | 91,622,120 | 91,622,138 | TGCCAGCCCTGTTCTCTTC |
TDP | 91,622,093 | 91,622,118 | TTAAGACTCTGACTGCAGCCTGGTGT |
TDR | 91,622,067 | 91,622,084 | GCCCACGAATGTGCAGAC |
PCR Primers
Primer | Sequence |
SU | CAAATGATTATGTGAAAATCCTAT |
SD | AAGGCTGCAGTTTAAGGATCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 72 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15829A-A5 | VGB6 | C57BL/6NTac | |
15829A-B5 | VGB6 | C57BL/6NTac | |
15829A-E6 | VGB6 | C57BL/6NTac | |
15829A-E10 | VGB6 | C57BL/6NTac | |
15829A-H9 | VGB6 | C57BL/6NTac | |