Gene | Pmaip1 |
Chromosome | 18 |
Deletion Start | 66,463,370 |
Deletion End | 66,458,657 |
Deletion Size | 4,714 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 18
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 66,458,941 | 66,458,959 | GGCTCGTGACTTCGACTGG |
TUP | 66,458,969 | 66,458,996 | TTCTTCAGGGCTTCTACCGAGACTGTGG |
TUR | 66,459,007 | 66,459,026 | TGATACGCTGGACTGGACTC |
TDF | 66,463,146 | 66,463,165 | GCGCAGGAAAGTCACAGAAG |
TDP | 66,463,175 | 66,463,203 | TGTGCCTTTCACTTGGGCTGTGTATTAAC |
TDR | 66,463,219 | 66,463,238 | GGACAACCCTGAGTCTCAAC |
PCR Primers
Primer | Sequence |
SU | GAAGTTTCCCTCCCACCTTC |
SD | AAAGCAATCCCAAACGACTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15891A-C5 | VGB6 | C57BL/6NTac | |
15891A-A3 | VGB6 | C57BL/6NTac | |