Gene | Naaladl1 |
Chromosome | 19 |
Deletion Start | 6,115,579 |
Deletion End | 6,105,801 |
Deletion Size | 9,779 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 6,106,595 | 6,106,619 | CTTGCCCAGGTTGTTTATTCCTATC |
TUP | 6,106,621 | 6,106,644 | TCCATCAGTCATGGTGGTCCCTGC |
TUR | 6,106,666 | 6,106,689 | GGTGGTTACCCTCTTCTCTATCTC |
TDF | 6,114,898 | 6,114,918 | TCCTTGGGTGAGCACATCTTG |
TDP | 6,114,920 | 6,114,942 | CCCTGCAGAAGAGCAGCCCTGAG |
TDR | 6,114,944 | 6,114,962 | CTGCCCTCTGCTGACACTC |
PCR Primers
Primer | Sequence |
SU | ACAGTCAGGGACTGACCGAC |
SD | TCATTTATTTGAGGGTTAAGAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 65 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
15903A-B2 | VGB6 | C57BL/6NTac | |
15903A-C6 | VGB6 | C57BL/6NTac | |
15903A-H4 | VGB6 | C57BL/6NTac | |
15903A-G7 | VGB6 | C57BL/6NTac | |
15903A-G8 | VGB6 | C57BL/6NTac | |
15903A-F9 | VGB6 | C57BL/6NTac | |