Gene | Slc3a1 |
Chromosome | 17 |
Deletion Start | 85,064,109 |
Deletion End | 85,028,435 |
Deletion Size | 35,675 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 85,028,836 | 85,028,858 | GGATGGGAATGGAGACCTGAAAG |
TUP | 85,028,862 | 85,028,883 | CGTGTTCGCCGCTCAGGACCAA |
TUR | 85,028,908 | 85,028,927 | CACAAGCCAGGCACAGAATG |
TDF | 85,063,200 | 85,063,222 | CAGCGTGCAGTGTTCTTTCTATC |
TDP | 85,063,224 | 85,063,249 | TCAGCGATCTGAGAATCCGCATCTGC |
TDR | 85,063,278 | 85,063,296 | CTTGGGCTTGGTCCTCATC |
PCR Primers
Primer | Sequence |
SU | CGCATTACTGTAGGCAGTTGG |
SD | GAGAAGGGAGCCAGAAGGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 97 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16054A-A3 | VGB6 | C57BL/6NTac | |
16054A-G2 | VGB6 | C57BL/6NTac | |
16054A-D2 | VGB6 | C57BL/6NTac | |