Gene | Actr5 |
Chromosome | 2 |
Deletion Start | 158,638,904 |
Deletion End | 158,625,145 |
Deletion Size | 13,760 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 158,625,564 | 158,625,586 | GGCAGTAGGGTATTGAACACAAG |
TUP | 158,625,588 | 158,625,611 | TCGTCAGCCTTGTGCTAGGAGCTA |
TUR | 158,625,635 | 158,625,655 | AGACAGCCCATCCTCTGGAAG |
TDF | 158,638,194 | 158,638,213 | CAAGCTGTGCAGGCCACTAC |
TDP | 158,638,215 | 158,638,237 | TGCTCAGCCGTGTCCCAGACAAT |
TDR | 158,638,261 | 158,638,280 | TCCAGGCCCTACCATGTTTC |
PCR Primers
Primer | Sequence |
SU | GATCTGCAAGGCTATGCAG |
SD | AACAGTGCAAAGAGCAGCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 87 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16080A-G11 | VGB6 | C57BL/6NTac | |
16080A-G10 | VGB6 | C57BL/6NTac | |
16080A-A5 | VGB6 | C57BL/6NTac | |
16080A-H9 | VGB6 | C57BL/6NTac | |