Gene | Syce1l |
Chromosome | 8 |
Deletion Start | 113,654,991 |
Deletion End | 113,643,240 |
Deletion Size | 11,752 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 113,643,252 | 113,643,271 | GAGCCTTTGATGGCGGAGTG |
TUP | 113,643,274 | 113,643,299 | TGGGAGCTGAGAAAGCTGAAGACACC |
TUR | 113,643,307 | 113,643,326 | TCTACCCTGTTGGCCTTCAC |
TDF | 113,654,386 | 113,654,406 | TGGTCCACCATCTCTGACTTG |
TDP | 113,654,407 | 113,654,430 | TTGGCATCTGACCACCCATGTTGA |
TDR | 113,654,437 | 113,654,456 | CCCGCATATCGTCCTCACTC |
PCR Primers
Primer | Sequence |
SU | GATGCTCTTAGCTGCCCAAG |
SD | TGTGGCTCCCTCAGTGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 75 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16142A-B1 | VGB6 | C57BL/6NTac | |
16142A-C3 | VGB6 | C57BL/6NTac | |
16142A-G2 | VGB6 | C57BL/6NTac | |
16142A-C8 | VGB6 | C57BL/6NTac | |