Gene | Nlgn1 |
Chromosome | 3 |
Deletion Start | 26,133,731 |
Deletion End | 26,133,246 |
Deletion Size | 486 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 26,133,646 | 26,133,663 | ATCCGGTGCCCCATTGAC |
TUP | 26,133,619 | 26,133,645 | TCTCTGCTTGTTGGGATGTTTGCTACA |
TUR | 26,133,577 | 26,133,601 | GGGTCTACATCATCCAACTTTTGAG |
TDF | 26,133,428 | 26,133,447 | GCCTCCAGAACCACCATCTC |
TDP | 26,133,404 | 26,133,426 | CTGGTCTGACATCCGGAACGCCA |
TDR | 26,133,351 | 26,133,372 | TTCAGGCAATCTGCCATCAATG |
PCR Primers
Primer | Sequence |
SU | AGACCCACTGCTACCTGG |
SD | CCTGCACATGCAATGAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 97 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16704A-A3 | VGB6 | C57BL/6NTac | |
16704A-C2 | VGB6 | C57BL/6NTac | |
16704A-H4 | VGB6 | C57BL/6NTac | |
16704A-D12 | VGB6 | C57BL/6NTac | |
16704A-D2 | VGB6 | C57BL/6NTac | |
16704A-F12 | VGB6 | C57BL/6NTac | |