Gene | Colq |
Chromosome | 14 |
Deletion Start | 31,547,485 |
Deletion End | 31,524,375 |
Deletion Size | 23,111 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 14
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 31,546,786 | 31,546,807 | GCAGAGGACTTGTGGTCAGTTC |
TUP | 31,546,764 | 31,546,785 | CCAGCACCTCCACTGTGGCTCA |
TUR | 31,546,696 | 31,546,715 | CACACCTGGCATCCACAGAG |
TDF | 31,524,517 | 31,524,534 | TGCCCACTGTGCTGTCTG |
TDP | 31,524,487 | 31,524,512 | CCCTGCCCTGAGCAGTATCTTTGCCT |
TDR | 31,524,458 | 31,524,477 | GCACCGAAGGTCTCCGTATG |
PCR Primers
Primer | Sequence |
SU | ACAGGAAGCAAGGGACAGTG |
SD | AGTGCTAAGCCAAATCCACG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 112 bp | + | + | - |
TDF | TDR | 77 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16741A-C8 | VGB6 | C57BL/6NTac | |
16741A-F12 | VGB6 | C57BL/6NTac | |