Gene | Arih2 |
Chromosome | 9 |
Deletion Start | 108,644,274 |
Deletion End | 108,611,637 |
Deletion Size | 32,638 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 108,643,562 | 108,643,586 | CTGCTGTGATGAAATGATGTGTATC |
TUP | 108,643,514 | 108,643,543 | ACAACTGTTTGATAGTACCCAGATGCCCTG |
TUR | 108,643,469 | 108,643,490 | GAACCACCAGTACACCTGAAAC |
TDF | 108,612,003 | 108,612,023 | GGGCTTCGTTTGACTCCTTTC |
TDP | 108,611,964 | 108,611,992 | AGTACCGTCCAAGAGGTTTAAGGAGACAC |
TDR | 108,611,941 | 108,611,960 | TCTCAACGGACTCCCACAAG |
PCR Primers
Primer | Sequence |
SU | TTCAGGACTTAGAGGCAGATG |
SD | AGCACCCATGACCAGTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 118 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16845A-E5 | VGB6 | C57BL/6NTac | |
16845A-G2 | VGB6 | C57BL/6NTac | |
16845A-E4 | VGB6 | C57BL/6NTac | |