Gene | Pgr |
Chromosome | 9 |
Deletion Start | 8,903,743 |
Deletion End | 8,900,471 |
Deletion Size | 3,273 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 8,900,755 | 8,900,777 | GGAAGGAGGCAGAAATTCCAGAG |
TUP | 8,900,779 | 8,900,805 | CCCGGAGAAGGACAGCAGACTCTTAGA |
TUR | 8,900,821 | 8,900,839 | CCCGGAGGGAGTCAACAAC |
TDF | 8,903,585 | 8,903,606 | TGCATTTCAAGGCCAGATTCAG |
TDP | 8,903,607 | 8,903,631 | AAGCCAGCCAGAGCCCACAGTATGG |
TDR | 8,903,702 | 8,903,721 | TTGCAGCTCCCACAGGTAAG |
PCR Primers
Primer | Sequence |
SU | AAGAAGTCCGGAGATAGCGG |
SD | CACATCACTAGAGTAAAGCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 85 bp | + | + | - |
TDF | TDR | 137 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16851B-G5 | VGB6 | C57BL/6NTac | |
16851A-C11 | VGB6 | C57BL/6NTac | |