Gene | Hoxb4 |
Chromosome | 11 |
Deletion Start | 96,320,368 |
Deletion End | 96,318,773 |
Deletion Size | 1,596 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 96,319,162 | 96,319,180 | CCACTCCGCGTGCAAAGAG |
TUP | 96,319,181 | 96,319,203 | CCCGTCGTCTACCCCTGGATGCG |
TUR | 96,319,267 | 96,319,285 | TCGGAGGTCCCTTCACTGT |
TDF | 96,320,077 | 96,320,094 | TACACTCGCCAGCAGGTC |
TDP | 96,320,102 | 96,320,131 | TGGAGAAGGAGTTTCACTACAATCGCTACC |
TDR | 96,320,203 | 96,320,222 | CACTTCATGCGCCGATTCTG |
PCR Primers
Primer | Sequence |
SU | AACAGGCCCTCCAATTAACC |
SD | GGCGCAGCAGACTCCTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 124 bp | + | + | - |
TDF | TDR | 146 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
16876A-A12 | VGB6 | C57BL/6NTac | |
16876A-B5 | VGB6 | C57BL/6NTac | |
16876A-E11 | VGB6 | C57BL/6NTac | |
16876A-B4 | VGB6 | C57BL/6NTac | |
16876A-H3 | VGB6 | C57BL/6NTac | |