Gene | Pcp4 |
Chromosome | 16 |
Deletion Start | 96,493,863 |
Deletion End | 96,467,785 |
Deletion Size | 26,079 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 96,468,095 | 96,468,115 | TTGTGCTTTCTCCAGGGAGTG |
TUP | 96,468,116 | 96,468,142 | CGTCCTCACGTGTTTCCTTGGGATACA |
TUR | 96,468,170 | 96,468,189 | GAGACCGGATTTCCCAGGTG |
TDF | 96,493,533 | 96,493,552 | ACCCTCGCTGTCTGGCTTTC |
TDP | 96,493,562 | 96,493,589 | CCTGAGTTGTATTCAGCCAGTAGTGGGC |
TDR | 96,493,598 | 96,493,616 | GAGTCAACTGCCACCTTCC |
PCR Primers
Primer | Sequence |
SU | TTTGGTGTGCAGCAAATTC |
SD | CTCACCAACCCTAATGAAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17038B-A2 | VGB6 | C57BL/6NTac | |
17038B-B11 | VGB6 | C57BL/6NTac | |
17038C-A9 | VGB6 | C57BL/6NTac | |
17038C-C9 | VGB6 | C57BL/6NTac | |
17038C-G4 | VGB6 | C57BL/6NTac | |