Gene | S1pr5 |
Chromosome | 9 |
Deletion Start | 21,245,125 |
Deletion End | 21,243,872 |
Deletion Size | 1,254 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 21,244,958 | 21,244,977 | TGCTGGAGAACTTGGCTGTG |
TUP | 21,244,936 | 21,244,956 | TCTTGGTGCTGGTCCGCCACC |
TUR | 21,244,877 | 21,244,897 | GAGCAGGTCCGACAAAGTGAG |
TDF | 21,244,365 | 21,244,384 | GCCCTGCTTCGTACCCTTAG |
TDP | 21,244,336 | 21,244,355 | CCTGGCCTTCGTGGCCTGCT |
TDR | 21,244,297 | 21,244,321 | ACGCGACATCCAGTAATAGCAAGAG |
PCR Primers
Primer | Sequence |
SU | TAGTCTCCGTGTGGAGTGTC |
SD | TGGAGGTCTGAATCCAGGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 101 bp | + | + | - |
TDF | TDR | 88 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17045A-A9 | VGB6 | C57BL/6NTac | |
17045A-D1 | VGB6 | C57BL/6NTac | |
17045A-D11 | VGB6 | C57BL/6NTac | |
17045A-F11 | VGB6 | C57BL/6NTac | |
17045A-D3 | VGB6 | C57BL/6NTac | |