17049   Efna1     Status: ES cell colonies screened / QC positives

GeneEfna1
Chromosome3
Deletion Start89,279,539
Deletion End89,272,476
Deletion Size7,064
Genome Build38
MGI IDMGI:103236
NCBI Gene ID13636
BAC ID337K3
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 3

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF89,279,47189,279,488GACCGCCACATCGTCTTC
TUP89,279,44389,279,470TGGAACAGTTCAAATCCCAAGTAAGCCC
TUR89,279,39189,279,409ACCCTGCGAAAGGCCATTG
TDF89,272,97289,272,993TGCTTGAAGCTGAAGGTGACTG
TDP89,272,93489,272,962AAATCAGTGAGTGTCAGGCCCTGTGGACC
TDR89,272,90689,272,924ACCACGCCCAGCACAGATG

PCR Primers

PrimerSequence
SUTTCCTCCACCTCCAACGTAG
SDTGCACATTATGGCTTCCTTG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR98 bp++-
TDFTDR88 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
17049A-G9VGB6C57BL/6NTac
17049A-G6VGB6C57BL/6NTac
17049A-D1VGB6C57BL/6NTac
17049A-F12VGB6C57BL/6NTac
17049A-A4VGB6C57BL/6NTac