Gene | Tnfrsf1a |
Chromosome | 6 |
Deletion Start | 125,361,994 |
Deletion End | 125,350,027 |
Deletion Size | 11,968 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 125,350,448 | 125,350,465 | TGGGAGTGGACCCGAAAC |
TUP | 125,350,469 | 125,350,491 | ACAAAGCTGGGCAGCCTTCCGGT |
TUR | 125,350,522 | 125,350,542 | CAGAAATGGAGGCGGCAGAAG |
TDF | 125,361,100 | 125,361,120 | GATCCCGTGCCTGTCAAAGAG |
TDP | 125,361,122 | 125,361,145 | TGAGAAGGGACGACTCCAGCTTCC |
TDR | 125,361,146 | 125,361,166 | GGCGTTGGAAGGAGTAGTCAG |
PCR Primers
Primer | Sequence |
SU | GAACTCTGGCTCATGATCG |
SD | ACTGAGGAGGCCCTGAGAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 67 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
17059A-B1 | VGB6 | C57BL/6NTac | |
17059A-G1 | VGB6 | C57BL/6NTac | |
17059A-F1 | VGB6 | C57BL/6NTac | |
17059A-C12 | VGB6 | C57BL/6NTac | |
17059A-E2 | VGB6 | C57BL/6NTac | |